For clinicians

H. pylori: testing, treatment and confirmation of eradication

Confirm active infection, review the antibiotic history and arrange the test of cure when prescribing treatment.

On this page

Author: Dr Henry Wei. Sources checked 16 October 2026.

In practice

Review previous antibiotics and arrange the test of cure

I check previous eradication regimens, macrolide exposure and penicillin allergy before treatment. The plan includes medicine timing before testing and responsibility for reviewing the result.

Guidance behind this advice
GP consultation tool

Work through the dyspepsia consultation

Review symptoms, H. pylori results, previous antibiotics and treatment response, then prepare a GP summary and patient advice.

1. Assess the indication and alarm features

In adults with dyspepsia, assess infection and gastric cancer risk, including country of birth, ethnicity, family history, previous ulcers and NSAID use. Routine paediatric test-and-treat is generally unsuitable.

Dysphagia, bleeding, IDA, weight loss or persistent vomiting may require gastroscopy. Endoscopy can assess complications and obtain samples for culture or susceptibility testing in selected cases.

2. Obtain a reliable active-infection test

Laboratory faecal antigen testing is the usual NZ non-invasive test; a validated breath test is an alternative. Antibiotics and PPIs can interfere with the result, so follow the minimum medicine intervals before sampling.

Medicine pauses before faecal antigen or breath testing
MedicineMinimum interval before the sample
PPITwo weeks without treatment, when clinically safe.
AntibioticsFour weeks, including antibiotics taken for another infection.
BismuthFour weeks.

3. Choose treatment and support completion

Review previous antibiotics, allergies, interactions, pregnancy and the ability to complete treatment. NZ guidance includes a 14-day PPI/amoxicillin/clarithromycin regimen for selected patients; bismuth quadruple therapy is an option with previous macrolide exposure, penicillin allergy or persistent infection.

Recent NZ data suggest first-line eradication success is in the order of 80–90% when treatment is completed and cure is checked. Around 10–20% may therefore need a second-line course; bismuth quadruple therapy is a common option, selected using the previous antibiotic history, allergies and current NZ guidance.

Use current prescribing guidance and the linked navigator for regimen details. Provide a dosing schedule and medicine-specific food advice. Mild nausea, loose stools or altered taste are often temporary; intolerance that prevents completion needs prompt review. Incomplete treatment can contribute to failure and resistance.

4. Confirm eradication and review symptoms

Arrange faecal antigen testing four to eight weeks after treatment; six to eight weeks is a practical usual interval. Apply the medicine pauses above even if symptoms have resolved.

For persistent infection, choose an appropriate alternative or seek gastroenterology/microbiology advice. Reusing failed clarithromycin treatment requires a susceptibility-based reason. Persistent symptoms after confirmed eradication may need assessment for reflux, functional dyspepsia or another cause.

Clinical pearls

  • Serology can remain positive after eradication; use an active-infection test to confirm cure.
  • Persistent infection needs review of adherence, antibiotic history and test timing before another course.
  • Gastric ulcers, metaplasia, atrophy or dysplasia may need separate endoscopic follow-up after eradication.
Diagrams for patient discussions
Explore the explanation

Understand the infection, then check treatment worked

Choose a view
Explanatory diagram
H. pylori beside the stomach liningSide-view microscopic concept, not whole stomach anatomy. The stomach lumen is above a protective mucus layer. Spiral symbols in the mucus represent H. pylori near the epithelial surface. The surface dips into gastric pits. Deeper glands, individual cells and muscle layers are omitted. No organisms are drawn invading the deeper wall. The scale is exaggerated; this is not a clinical photograph or a prediction of cancer.H. pylori lives beside the stomach lining Inside the stomachAcid-containing space Mucus layerIllustrated bacteria Surface lining and gastric pits, simplified Most infected people do not have an ulcer or cancer.

Where is the infection?

H. pylori lives near the surface of the stomach lining. It can cause inflammation and ulcers. Finding it does not mean you have cancer, and it may not explain every symptom.

Simplified illustrations, not to scale. These show an example, not your own anatomy or test result.

Read every diagram explanation

Where is the infection?

H. pylori lives near the surface of the stomach lining. It can cause inflammation and ulcers. Finding it does not mean you have cancer, and it may not explain every symptom.

What do the tests show?

A stool antigen test or breath test can look for current infection. A blood antibody result can stay positive after the infection has gone. Biopsies during gastroscopy can also be tested when the examination is indicated.

Prepare for a reliable test

Some medicines can suppress the infection enough to give a false negative result. The usual gaps are two weeks after stopping a PPI and four weeks after antibiotics or bismuth, but agree an individual medicine plan before changing treatment.

Check after treatment

Current NZ professional guidance recommends confirming the infection has cleared, even if you feel better. Retesting is generally done 6–8 weeks after finishing treatment, with the PPI preparation agreed beforehand.

Information to share with your patient

Related clinician articles

References

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